Publications

@article{Ye2015,

title = {Enzymatic polymerization of poly(thymine) for the synthesis of copper nanoparticles with tunable size and their application in enzyme sensing},

author = {Tai Ye and Chunying Li and Chen Su and Xinghu Ji and Jiao Zheng and Philip Tinnefeld and Zhike He},

doi = {10.1039/c5cc01517k},

year  = {2015},

date = {2015-01-01},

journal = {Chemical Communications},

volume = {51},

number = {41},

pages = {8644--8647},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Holzmeister_2014b,

title = {Quantum Yield and Excitation Rate of Single Molecules close to Metallic Nanostructures},

author = {Phil Holzmeister and Enrico Pibiri and Jürgen J. Schmied and Tapasi Sen and Guillermo P. Acuna and Philip Tinnefeld },

doi = {10.1038/ncomms6356},

year  = {2014},

date = {2014-11-05},

urldate = {2014-11-05},

journal = {Nature Communications},

volume = {5},

number = {5356},

pages = {1--9},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gust_2014,

title = {A Starting Point for Fluorescence-Based Single-Molecule Measurements in Biomolecular Research},

author = {Alexander Gust and Adrian Zander and Andreas Gietl and Phil Holzmeister and Sarah Schulz and Birka Lalkens and Philip Tinnefeld and Dina Grohmann},

doi = {10.3390/molecules191015824},

year  = {2014},

date = {2014-09-01},

journal = {Molecules},

volume = {19},

number = {10},

pages = {15824--15865},

publisher = {MDPI AG},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Beater_2014b,

title = { Towards Quantitative Fluorescence Microscopy with DNA Origami Nanorulers},

author = {Susanne Beater and Mario Raab and Philip Tinnefeld},

doi = {10.1016/B978-0-12-420138-5.00024-0},

year  = {2014},

date = {2014-06-25},

urldate = {2014-06-25},

journal = {Methods in Molecular Biology},

volume = {123},

pages = {449--466},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Acuna_2014,

title = {Enhancing single-molecule fluorescence with nanophotonics},

author = {Guillermo Acuna and Dina Grohmann and Philip Tinnefeld},

doi = {10.1016/j.febslet.2014.06.016},

year  = {2014},

date = {2014-06-01},

journal = {FEBS Letters},

volume = {588},

number = {19},

pages = {3547--3552},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Raab_2014,

title = {Fluorescence Microscopy with 6 nm Resolution on DNA Origami},

author = {Mario Raab and Jürgen J. Schmied and Ija Jusuk and Carsten Forthmann and Philip Tinnefeld},

doi = {10.1002/cphc.201402179},

year  = {2014},

date = {2014-06-01},

journal = {ChemPhysChem},

volume = {15},

number = {12},

pages = {2431--2435},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Holzmeister_2014d,

title = {Single-Molecule Photophysics of Dark Quenchers as Non-Fluorescent FRET Acceptors},

author = {Phil Holzmeister and Bettina Wünsch and Andreas Gietl and Philip Tinnefeld },

doi = {10.1039/c3pp50274k},

year  = {2014},

date = {2014-06-01},

urldate = {2014-06-01},

journal = {Photochemical & Photobiological Sciences},

volume = {13},

number = {6},

pages = {853--858},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Pibiri_2014,

title = {Single-Molecule Positioning in Zeromode Waveguides by DNA Origami Nanoadapters},

author = {Enrico Pibiri and Phil Holzmeister and Birka Lalkens and Guillermo P. Acuna and Philip Tinnefeld},

doi = {10.1021/nl501064b},

year  = {2014},

date = {2014-05-01},

journal = {Nano Letters},

volume = {14},

number = {6},

pages = {3499--3503},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Schmied_2014,

title = {DNA origami–based standards for quantitative fluorescence microscopy},

author = {Jürgen J Schmied and Mario Raab and Carsten Forthmann and Enrico Pibiri and Bettina Wünsch and Thorben Dammeyer and Philip Tinnefeld},

doi = {10.1038/nprot.2014.079},

year  = {2014},

date = {2014-05-01},

journal = {Nature Protocols},

volume = {9},

number = {6},

pages = {1367--1391},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Holzmeister_2014c,

title = { Geminate Recombination as Photoprotection Mechanism for Fluorescent Dyes},

author = {Phil Holzmeister and Andreas Grietl and Philip Tinnefeld },

doi = {10.1002/anie.201310300},

year  = {2014},

date = {2014-04-08},

urldate = {2014-04-08},

journal = {Angewandte Chemie International Edition},

volume = {53},

number = {22},

pages = {5685--5688},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Pellegrotti_2014,

title = {Controlled Reduction of Photobleaching in DNA Origami–Gold Nanoparticle Hybrids},

author = {Jesica V. Pellegrotti and Guillermo P. Acuna and Anastasiya Puchkova and Phil Holzmeister and Andreas Gietl and Birka Lalkens and Fernando D. Stefani and Philip Tinnefeld},

doi = {10.1021/nl500841n},

year  = {2014},

date = {2014-04-01},

journal = {Nano Letters},

volume = {14},

number = {5},

pages = {2831--2836},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gietl_2014,

title = {Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways},

author = {Andreas Gietl and Phil Holzmeister and Fabian Blombach and Sarah Schulz and Lena Voith Voithenberg and Don C. Lamb and Finn Werner and Philip Tinnefeld and Dina Grohmann},

doi = {10.1093/nar/gku273},

year  = {2014},

date = {2014-04-01},

journal = {Nucleic Acids Research},

volume = {42},

number = {10},

pages = {6219--6231},

publisher = {Oxford University Press (OUP)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Heucke_2014,

title = {Placing Individual Molecules in the Center of Nanoapertures},

author = {Stephan F. Heucke and Fabian Baumann and Guillermo P. Acuna and Philip M. D. Severin and Stefan W. Stahl and Mathias Stackharn and Ingo H. Stein and Philip Altpeter and Philip Tinnefeld and Hermann E. Gaub },

doi = {10.1021/nl401517a},

year  = {2014},

date = {2014-02-12},

urldate = {2014-02-12},

journal = {Nano Letters},

volume = {14},

number = {2},

pages = {391--395},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Holzmeister_2014,

title = {Breaking the concentration limit of optical single-molecule detection},

author = {Phil Holzmeister and Guillermo P. Acuna and Dina Grohmann and Philip Tinnefeld},

doi = {10.1039/c3cs60207a},

year  = {2014},

date = {2014-01-01},

journal = {Chem. Soc. Rev.},

volume = {43},

number = {4},

pages = {1014--1028},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Beater_2014,

title = {Choosing dyes for cw-STED nanoscopy using self-assembled nanorulers},

author = {Susanne Beater and Phil Holzmeister and Enrico Pibiri and Birka Lalkens and Philip Tinnefeld},

doi = {10.1039/c4cp00127c},

year  = {2014},

date = {2014-01-01},

booktitle = {Methods in Cell Biology},

journal = {Phys. Chem. Chem. Phys.},

volume = {16},

number = {15},

pages = {6990--6996},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Zander_2013,

title = {Single-molecule FRET supports the two-state model of Argonaute action},

author = {Adrian Zander and Phil Holzmeister and Daniel Klose and Philip Tinnefeld and Dina Grohmann},

doi = {10.4161/rna.27446},

year  = {2013},

date = {2013-12-20},

urldate = {2013-12-01},

journal = {RNA Biology},

volume = {11},

number = {1},

pages = {45--56},

publisher = {Informa UK Limited},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Yu_2013,

title = {Distance control in-between plasmonic nanoparticles via biological and polymeric spacers},

author = {Xiang Yu and Dang Yuan Lei and Faheem Amin and Raimo Hartmann and Guillermo P. Acuna and Andrés Guerrero-Martínez and Stefan A. Maier and Philip Tinnefeld and Susana Carregal-Romero and Wolfgang J. Parak},

doi = {10.1016/j.nantod.2013.09.001},

year  = {2013},

date = {2013-10-01},

journal = {Nano Today},

volume = {8},

number = {5},

pages = {480--493},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Grohmann_2013,

title = {Making connections—strategies for single molecule fluorescence biophysics},

author = {Dina Grohmann and Finn Werner and Philip Tinnefeld},

doi = {10.1016/j.cbpa.2013.05.020},

year  = {2013},

date = {2013-08-01},

journal = {Current Opinion in Chemical Biology},

volume = {17},

number = {4},

pages = {691--698},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{M_ller_2013,

title = {Angular modulation of single-molecule fluorescence by gold nanoparticles on DNA origami templates},

author = {Friederike M. Möller and Phil Holzmeister and Tapasi Sen and Guillermo P. Acuna and Philip Tinnefeld},

doi = {10.1515/nanoph-2013-0011},

year  = {2013},

date = {2013-07-01},

journal = {Nanophotonics},

volume = {2},

number = {3},

pages = {167--172},

publisher = {Walter de Gruyter GmbH},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kurz_2013,

title = {Counting Fluorescent Dye Molecules on DNA Origami by Means of Photon Statistics},

author = {Anton Kurz and Jürgen J. Schmied and Kristin S. Grußmayer and Phil Holzmeister and Philip Tinnefeld and Dirk-Peter Herten},

doi = {10.1002/smll.201300619},

year  = {2013},

date = {2013-06-01},

journal = {Small},

volume = {9},

number = {23},

pages = {4061--4068},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tinnefeld_2013,

title = {Breaking the concentration barrier},

author = {Philip Tinnefeld},

doi = {10.1038/nnano.2013.122},

year  = {2013},

date = {2013-06-01},

journal = {Nature Nanotechnology},

volume = {8},

number = {7},

pages = {480--482},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Zhang_2013,

title = {One-Pot Synthesized Aptamer-Functionalized CdTe:Zn2$mathplus$ Quantum Dots for Tumor-Targeted Fluorescence Imaging in Vitro and in Vivo},

author = {Cuiling Zhang and Xinghu Ji and Yuan Zhang and Guohua Zhou and Xianliang Ke and Hanzhong Wang and Philip Tinnefeld and Zhike He},

doi = {10.1021/ac400606e},

year  = {2013},

date = {2013-05-01},

journal = {Analytical Chemistry},

volume = {85},

number = {12},

pages = {5843--5849},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Schmied_2013,

title = {DNA Origami Nanopillars as Standards for Three-Dimensional Superresolution Microscopy},

author = {Jürgen J. Schmied and Carsten Forthmann and Enrico Pibiri and Birka Lalkens and Philipp Nickels and Tim Liedl and Philip Tinnefeld},

doi = {10.1021/nl304492y},

year  = {2013},

date = {2013-02-01},

journal = {Nano Letters},

volume = {13},

number = {2},

pages = {781--785},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Heucke_2013,

title = {Nanoapertures for AFM-based single-molecule force spectroscopy},

author = {Stephan F. Heucke and Elias M. Puchner and Stefan W. Stahl and Alexander W. Holleitner and Hermann E. Gaub and Philip Tinnefeld},

doi = {10.1504/ijnt.2013.053529},

year  = {2013},

date = {2013-01-01},

journal = {International Journal of Nanotechnology},

volume = {10},

number = {5/6/7},

pages = {607},

publisher = {Inderscience Publishers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Dammeyer_2013,

title = {Broad host range vectors for expression of proteins with (Twin-) Strep-tag, His-tag and engineered, export optimized yellow fluorescent protein},

author = {Thorben Dammeyer and Kenneth N Timmis and Philip Tinnefeld},

doi = {10.1186/1475-2859-12-49},

year  = {2013},

date = {2013-01-01},

journal = {Microbial Cell Factories},

volume = {12},

number = {1},

pages = {49},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nokey,

title = {Nanometerlineale für Superauflösungs-Mikroskopie},

author = {S. Beater J. Schmied C. Forthmann},

year  = {2013},

date = {2013-01-01},

journal = {LaborPraxis},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Schmied_2012,

title = {Fluorescence and super-resolution standards based on DNA origami},

author = {Jürgen J Schmied and Andreas Gietl and Phil Holzmeister and Carsten Forthmann and Christian Steinhauer and Thorben Dammeyer and Philip Tinnefeld},

doi = {10.1038/nmeth.2254},

year  = {2012},

date = {2012-12-01},

journal = {Nature Methods},

volume = {9},

number = {12},

pages = {1133--1134},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Acuna_2012b,

title = { Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas},

author = {Guillermo P. Acuna and Friederike M. Möller and Phil Holzmeister and Susanne Beater and Birka Lalkens and Philip Tinnefeld },

doi = {10.1126/science.1228638},

year  = {2012},

date = {2012-10-26},

urldate = {2012-10-26},

journal = {Science},

volume = {338},

number = {6106},

pages = {506--5010},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Dammeyer_2012,

title = {Engineered fluorescent proteins illuminate the bacterial periplasm},

author = {Thorben Dammeyer and Philip Tinnefeld},

doi = {10.5936/csbj.201210013},

year  = {2012},

date = {2012-10-01},

journal = {Computational and Structural Biotechnology Journal},

volume = {3},

number = {4},

pages = {e201210013},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ha_2012,

title = {Photophysics of Fluorescent Probes for Single-Molecule Biophysics and Super-Resolution Imaging},

author = {Taekjip Ha and Philip Tinnefeld},

doi = {10.1146/annurev-physchem-032210-103340},

year  = {2012},

date = {2012-05-01},

journal = {Annual Review of Physical Chemistry},

volume = {63},

number = {1},

pages = {595--617},

publisher = {Annual Reviews},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tinnefeld_2012,

title = {"Self-healing" dyes: intramolecular stabilization of organic fluorophores},

author = {Philip Tinnefeld and Thorben Cordes},

doi = {10.1038/nmeth.1977},

year  = {2012},

date = {2012-04-01},

journal = {Nature Methods},

volume = {9},

number = {5},

pages = {426--427},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gietl_2012,

title = {DNA origami as biocompatible surface to match single-molecule and ensemble experiments},

author = {Andreas Gietl and Phil Holzmeister and Dina Grohmann and Philip Tinnefeld},

doi = {10.1093/nar/gks326},

year  = {2012},

date = {2012-04-01},

journal = {Nucleic Acids Research},

volume = {40},

number = {14},

pages = {e110--e110},

publisher = {Oxford University Press (OUP)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Itano_2012,

title = {Super-Resolution Imaging of C-Type Lectin and Influenza Hemagglutinin Nanodomains on Plasma Membranes Using Blink Microscopy},

author = {Michelle S. Itano and Christian Steinhauer and Jürgen J. Schmied and Carsten Forthmann and Ping Liu and Aaron K. Neumann and Nancy L. Thompson and Philip Tinnefeld and Ken Jacobson},

doi = {10.1016/j.bpj.2012.02.022},

year  = {2012},

date = {2012-04-01},

journal = {Biophysical Journal},

volume = {102},

number = {7},

pages = {1534--1542},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Acuna_2012,

title = {Distance Dependence of Single-Fluorophore Quenching by Gold Nanoparticles Studied on DNA Origami},

author = {Guillermo P. Acuna and Martina Bucher and Ingo H. Stein and Christian Steinhauer and Anton Kuzyk and Phil Holzmeister and Robert Schreiber and Alexander Moroz and Fernando D. Stefani and Tim Liedl and Friedrich C. Simmel and Philip Tinnefeld},

doi = {10.1021/nn2050483},

year  = {2012},

date = {2012-03-01},

journal = {ACS Nano},

volume = {6},

number = {4},

pages = {3189--3195},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Stein_2012,

title = { Linking Single-Molecule Blinking to Chromophore Structure and Redox Potentials },

author = {Ingo H. Stein and Stella Capone and Jochem H. Smit and Fabian Baumann and Thorben Cordes and Philip Tinnefeld },

doi = {10.1002/cphc.201100820},

year  = {2012},

date = {2012-03-01},

urldate = {2012-03-01},

journal = {ChemPhysChem},

volume = {13},

number = {4},

pages = {931--937},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tinnefeld_2011,

title = {Fluoreszenzmikroskopie "bottom-up": Von Einzelmolekülen zur Superauflösung},

author = {Philip Tinnefeld},

doi = {10.1515/9783110236774.177},

year  = {2011},

date = {2011-08-01},

journal = {Jahrbuch der Göttinger Akademie der Wissenschaften},

volume = {2010},

number = {1},

pages = {177--183},

publisher = {Walter de Gruyter GmbH},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Huang_2011,

title = {Visual detection of melamine in milk samples based on label-free and labeled gold nanoparticles},

author = {Hui Huang and Li Li and Guohua Zhou and Zhihong Liu and Qiao Ma and Yuqi Feng and Guoping Zeng and Philip Tinnefeld and Zhike He},

doi = {10.1016/j.talanta.2011.05.006},

year  = {2011},

date = {2011-08-01},

journal = {Talanta},

volume = {85},

number = {2},

pages = {1013--1019},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tinnefeld_2011b,

title = {Protein-Protein Interactions – Pull-down for Single Molecules},

author = {Philip Tinnefeld},

doi = {10.1038/473461a},

year  = {2011},

date = {2011-05-10},

urldate = {2011-05-10},

journal = {Nature},

volume = {473},

pages = {461--462},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sauer_2011,

title = {Advanced markers and labels for life science and biomedical applications},

author = {Markus Sauer and Duncan Graham and Philip Tinnefeld},

doi = {10.1002/jbio.201100506},

year  = {2011},

date = {2011-05-01},

journal = {Journal of Biophotonics},

volume = {4},

number = {6},

pages = {375--376},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Stein_2011,

title = {Single-Molecule FRET Ruler Based on Rigid DNA Origami Blocks},

author = {Ingo H. Stein and Verena Schüller and Philip Böhm and Philip Tinnefeld and Tim Liedl},

doi = {10.1002/cphc.201000781},

year  = {2011},

date = {2011-02-01},

journal = {ChemPhysChem},

volume = {12},

number = {3},

pages = {689--695},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Stein_2011b,

title = { Single-Molecule Four-color FRET Reveals Energy Transfer Path Switching on DNA Origami},

author = {Ingo H. Stein and Christian Steinhauer and Philip Tinnefeld },

doi = {10.1021/ja1105464},

year  = {2011},

date = {2011-01-20},

urldate = {2011-01-20},

journal = {Journal of the American Chemical Society},

volume = {133},

number = {12},

pages = {4193--4195},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Smith_2011,

title = {A Structurally Variable Hinged Tetrahedron Framework from DNA Origami},

author = {David M. Smith and Verena Schüller and Carsten Forthmann and Robert Schreiber and Philip Tinnefeld and Tim Liedl},

doi = {10.4061/2011/360954},

year  = {2011},

date = {2011-01-01},

journal = {Journal of Nucleic Acids},

volume = {2011},

pages = {1--9},

publisher = {Hindawi Limited},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Cordes_2011,

title = {Mechanisms and advancement of antifading agents for fluorescence microscopy and single-molecule spectroscopy},

author = {Thorben Cordes and Andreas Maiser and Christian Steinhauer and Lothar Schermelleh and Philip Tinnefeld},

doi = {10.1039/c0cp01919d},

year  = {2011},

date = {2011-01-01},

journal = {Physical Chemistry Chemical Physics},

volume = {13},

number = {14},

pages = {6699},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nokey,

title = {Single-Molecule FRET & Super-Resolution: DNA Nanostructures Organize Dyes for Nanophotonic Apps},

author = {P. Tinnefel I.H. Stein},

year  = {2011},

date = {2011-01-01},

journal = {GIT Imaging and Microscopy},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jungmann_2010,

title = {Single-Molecule Kinetics and Super-Resolution Microscopy by Fluorescence Imaging of Transient Binding on DNA Origami},

author = {Ralf Jungmann and Christian Steinhauer and Max Scheible and Anton Kuzyk and Philip Tinnefeld and Friedrich C. Simmel},

doi = {10.1021/nl103427w},

year  = {2010},

date = {2010-10-01},

journal = {Nano Letters},

volume = {10},

number = {11},

pages = {4756--4761},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}